Commit e880c3d7 authored by jacqueslagnel's avatar jacqueslagnel
Browse files

minor

parent 05af94f6
......@@ -25,7 +25,7 @@ rule final_outs:
input:
"{outdir}/multiqc/multiqc_report_fastqc.html".format(outdir=config["outdir"]),
"{outdir}/multiqc/multiqc_report_bam.html".format(outdir=config["outdir"]),
"{outdir}/gene_count_dicoexpress.csv".format(outdir=config["outdir"])
expand("{outdir}/variant/{sample}_freebayes.vcf", outdir=config["outdir"], sample=samples['SampleName'])
#function return only the fastq1 file and adds the fastq path
def get_fastq1(wildcards):
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment