Commit 9d47af3f authored by jacqueslagnel's avatar jacqueslagnel
Browse files

cor README

parent f4947737
...@@ -41,19 +41,16 @@ ...@@ -41,19 +41,16 @@
### 1) Optionaly If using external rules/modules get all modules from the git: ### 1) Optionaly If using external rules/modules get all modules from the git:
`git clone https://forgemia.inra.fr/gafl/snakemake_modules.git smkmodules` `git clone https://forgemia.inra.fr/gafl/snakemake_modules.git smkmodules`
### 2) edit the config.yaml ### 2) Edit the config.yaml
### 3) set your samples in the sample.csv ### 3) Set your samples in the sample.csv
### 4) adjust the run_snakemake_pipeline.slurm file ### 4) Adjust the run_snakemake_pipeline.slurm file
### 5) run pipelene: ### 5) Run pipelene:
`sbatch run_snakemake_pipeline.slurm` `sbatch run_snakemake_pipeline.slurm`
### [Dicoexpress gitlab MIA](https://forgemia.inra.fr/GNet/dicoexpress)
#### Documentation being written (still) #### Documentation being written (still)
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