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GAFL
Pipelines_Snakemake
wgs
Commits
9d47af3f
Commit
9d47af3f
authored
Jun 24, 2020
by
jacqueslagnel
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cor README
parent
f4947737
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README.md
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@@ -41,19 +41,16 @@
### 1) Optionaly If using external rules/modules get all modules from the git:
`git clone https://forgemia.inra.fr/gafl/snakemake_modules.git smkmodules`
### 2)
e
dit the config.yaml
### 2)
E
dit the config.yaml
### 3)
s
et your samples in the sample.csv
### 3)
S
et your samples in the sample.csv
### 4)
a
djust the run_snakemake_pipeline.slurm file
### 4)
A
djust the run_snakemake_pipeline.slurm file
### 5)
r
un pipelene:
### 5)
R
un pipelene:
`sbatch run_snakemake_pipeline.slurm`
### [Dicoexpress gitlab MIA](https://forgemia.inra.fr/GNet/dicoexpress)
#### Documentation being written (still)
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