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Pipeline Nextflow

UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase

The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.

TilSeg is a tool designed to use the information from contiguous probes and it will merge them into longer segment stretches. Depending on the experiment, the chip type and the statistical analysis made, those segments may have different meanings and

report from a BAM alignment the number of BX:Z: tags shared between to blocks of given size

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variations detection.

Tutorial example for creation of a snakemake workflow using a singularity container on a hpc

Tutorial example for creation of a snakemake workflow using a singularity container on a hpc

Source code for https://iant.toulouse.inra.fr/T3E

The pyrocleaner is intended to clean the reads included in the sff file in order to ease the assembly process.

A presentation and day book area.

A set of population genomic scripts and utilities.

PAQmiR : Prediction Annotation and Quantification of miRNA with miRDeep2