GitLab

Sirius Quality BioMa Wheat LAI module

Ensemble de scripts utilisés au LRF pour traiter les données d'amplicon sequencing 16S et ITS.

UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase

instances of various cost function networks papers stored further benchmarking

TilSeg is a tool designed to use the information from contiguous probes and it will merge them into longer segment stretches. Depending on the experiment, the chip type and the statistical analysis made, those segments may have different meanings and

R'MESPlot est une application permettant l'exploitation interactive des résultats générés avec le logiciel R'MES.

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Quicly install docker on an Ubuntu based machine

A presentation and day book area.

AGScan is a micro-array image processing software. It is an evolution of BZScan2. It is based on ImageJ and purposes fluo micro-array images support, multi-language menus... It is also a plugin-based application (user can develop functionalities).

DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER).

The aim of the eggbiomechanic package is to allow a rapid and reproducible analysis of the biomechanical parameters of the chicken egg.

The aim of this package is to provide a full genomic features annotation from genomic coordinates, without use an annotation priority.

Fluidigm QPCR normalisation and statistical analysis.

The aim of this package is to allow a rapid and reproducible enhanced analysis of the mass spectrometry results provided by ScaffoldProteome software.

R'MES is a tool for studying word frequencies in biological sequences.

ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity. Visualization, Semantic similarity and Enrichment Analysis of Gene Ontology.