Explore projects

Juliette's internship project

Work during my internship at IRHS. A new method of visualization for displaying metadata changes in an iterative biclustering algorithm

BioNLP-ST format parser in Python

Fichiers de la formation Python, Inra de Bourgogne Franche-Compté. Formateur : Arnaud Mounier.

massXpert (of the http://www.msxpertsuite.org software collection) is a program that allows one to define brand new polymer chemistry definitions, to use them to define polymer sequences and to perform a large array of chemical simulations on them.

Species Perscrutandis Enixe Locis Locabuntur.

Tutorial example for creation of a snakemake workflow using a singularity container on a hpc

Code to reproduce the results of "Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals", https://doi.org/10.1093/bioinformatics/btac445

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

Python implementation of the Scheet and Stephens model and extensions

Script to generate a feature table file (.tbl) from GFF annotation and its corresponding fasta file.

GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)

Construction and Analysis of Protein-Protein Interactions (PPI) NETWORKS for complexes and biological processes

search a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vinifera. https://doi.org/10.