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Receptacle de methode numérique pour la simulation EDI

Approche EF et Fourier

EF:

Fourier: Simulateurs basés sur la transformé de Fourier discrete (discrete Fourier transform FFTW) pour des modèles (3D) de dynamique de population ou de génétique.

Species Perscrutandis Enixe Locis Locabuntur.

GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)

"beads" (billes en Français) est un logiciel de détection et de quantification de spots sur des images de gels d'électrophorèse bidimensionnelle.

Some R codes and a package (in beta) for changepoint detection in trees (with model selection and dynamic programming). It is based on the Ph.D. work of Solène Thépaut (Chapter 3, see: https://tel.archives-ouvertes.fr/tel-02457109/document)

Life game (Conway) using vle::discrete_time cells and vle.generic.builder Builder model to generate cells and their connexions

A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).

About Weighted Constraint Satisfaction Problem (WCSP). Réseaux de contraintes pondérées, Réseaux de fonctions de coût. toulbar2 : solver for cost function networks.

Meteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level

This project is a custom version of CB-Geo MPM.

Code de l'ESP32 utilisé dans le cadre du projet détecteur de CO2 https://jouy.pepiniere.inrae.fr/#!/projects/detecteur-co2-pour-inciter-a-l-aeration-des-locaux

Intern development of the methods for microbial guild inference and clustering

The SeSAM R package allows fully automatic construction of two successive genetic maps: a first one including an optimized subset of markers ensuring the robustness of orders to a given statistical threshold, and a second one including almost all polymorphic markers. It can handle all common types of biparental mapping populations, including progenies obtained from crossing heterozygous parents. In addition to the automatic procedure, SeSAM includes many functions for interactive mapping, file formats conversions, and generates many graphs useful to assess the quality of data and maps.

Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.

PDE using Dolfin