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DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.
This tool is expected to be easily customizable for specific filters, environments, or data schemas.
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FAIDARE: FAIR Data-finder for Agronomic Research
It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.
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metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER).
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Java library for metabolic networks
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PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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MassChroQ (Mass Chromatogram Quantification) is a powerfull and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from Liquid Chromatography-Mass Spectrometry techniques.
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iso DataIntegration Omics+ 1 more
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Projet de la version V2 de l'application des ORE.
Le projet est constitué de 2 sous projet :
La partie serveur qui fournit les web services de l'application
La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service
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Exploitation et maintenance du thésaurus INRAE, thésaurus ouvert et partagé couvrant les domaines de recherche d’INRAE. Il sert de référentiel au sein de l’institut pour indexer et annoter des documents, pages web, descriptions d’activités, jeux de d
sémantique skos thésaurus+ 1 more -
Fish migration monitoring, database connection and treatment
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Connecteur entre dataverse et jupyterhub
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Hosts the different implementation of EDA model
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i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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Premier atelier régional du projet PRAPS II
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Organisation d'un bootcamp autour de l'intégration et la visualisation de données avec Neo4J, adossé en amont d'une formation Neo4J en ligne.
Site web : https://work4graph.pages.mia.inra.fr/bootcamp-neo4j-2022/
database modelling ontologies+ 5 more