diff --git a/Snakemake/1000RNASeq_chicken/ASE/rules/STAR.smk b/Snakemake/1000RNASeq_chicken/ASE/rules/STAR.smk
index 315f8d734214eee7caaccf74dc16820f0fe66dbd..053841c211ff08cb2679abcea287cc43f7a5e003 100644
--- a/Snakemake/1000RNASeq_chicken/ASE/rules/STAR.smk
+++ b/Snakemake/1000RNASeq_chicken/ASE/rules/STAR.smk
@@ -188,7 +188,8 @@ rule SplitNCigarReads:
         fasta = 'Results/genomeMasked/' + os.path.splitext(os.path.basename(config['fasta_ref']))[0] + '_masked.fa', 
         idx = 'Results/genomeMasked/' + os.path.splitext(os.path.basename(config['fasta_ref']))[0] + '_masked.fa.fai', 
         dict = 'Results/genomeMasked/' + os.path.splitext(os.path.basename(config['fasta_ref']))[0] + '_masked.dict', 
-        bam = "Results/STAR_Aln_2/{sample}_rg_genomic{properlyPaired}rmdup_uniq.bam"
+        bam = "Results/STAR_Aln_2/{sample}_rg_genomic{properlyPaired}rmdup_uniq.bam",
+        bai = "Results/STAR_Aln_2/{sample}_rg_genomic{properlyPaired}rmdup_uniq.bai"
     output:
         bam = "Results/STAR_Aln_2/{sample}_rg_genomic{properlyPaired}rmdup_uniq_split.bam"
     params:
diff --git a/Snakemake/1000RNASeq_chicken/ASE/rules/basics.smk b/Snakemake/1000RNASeq_chicken/ASE/rules/basics.smk
index 3a7d39750726b5937600c5ab6901c879293eee7b..f37be0839f8295cb05ab04d52f67d7210fd702ce 100644
--- a/Snakemake/1000RNASeq_chicken/ASE/rules/basics.smk
+++ b/Snakemake/1000RNASeq_chicken/ASE/rules/basics.smk
@@ -52,5 +52,5 @@ rule indexFasta:
 	shell:
 		"""
 		samtools faidx {input.ref}
-        java -Xmx{params.mem} -jar {params.jar} R={input.ref} O={output.dict}
+        java -Xmx{params.mem} -jar {params.jar} CreateSequenceDictionary R={input.ref} O={output.dict}
 		"""