Commit d1b03d47 authored by Cedric Midoux's avatar Cedric Midoux
Browse files

conda activate prodigal-2.6.3

parent 326c79bf
......@@ -32,8 +32,8 @@ rule prodigal:
ffn = "work/prodigal/{sample}/{sample}_prodigal.ffn",
gff = "work/prodigal/{sample}/{sample}_prodigal.gff"
shell:
# "conda activate prodigal-2.6.3 "
# "&& "
"conda activate prodigal-2.6.3 "
"&& "
"prodigal "
"-f gff "
"-i {input} "
......@@ -44,8 +44,8 @@ rule prodigal:
"-p meta "
"&& "
"sed --in-place 's/*$//' {output.faa} "
# "&& "
# "conda deactivate "
"&& "
"conda deactivate "
def faa_input(wildcards):
if wildcards.sample == "catalogue":
......
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