spades highmem.q 500G

assembly.smk

@@ -82,7 +82,7 @@ rule metaspades:
 		20
 	params:
 		min_len = config["CONTIGS_LEN"],
-		mem_tot = 250,
+		mem_tot = 500,
 		input = lambda wildcards, input: "-1 %s -2 %s"%(" -1 ".join(input.R1), " -2 ".join(input.R2)) if set(['R1', 'R2']).issubset(input.keys()) else "--12 %s"%" --12 ".join(input.R1R2),
 		output = lambda wildcards, output: os.path.dirname(str(output.contigs))
 	shell:

cluster.json

@@ -23,8 +23,8 @@
 	},
 	"metaspades" :
 	{
-		"queue" : "highmem.q,maiage.q",
-		"cluster" : "-l h_vmem=12G"
+		"queue" : "highmem.q",
+		"cluster" : "-l h_vmem=25G"
 	},
 	"diamond" :
 	{