Commit 573384cd authored by Cedric Midoux's avatar Cedric Midoux
Browse files

megahit-1.2.9

parent cc6feb6b
......@@ -62,7 +62,7 @@ rule megahit:
input = lambda wildcards, input: "-1 %s -2 %s"%(",".join(input.R1), ",".join(input.R2)) if set(['R1', 'R2']).issubset(input.keys()) else "--12 %s"%",".join(input.R1R2),
output = lambda wildcards, output: os.path.dirname(str(output.contigs))
shell:
"conda activate megahit-1.2.8 "
"conda activate megahit-1.2.9 "
"&& "
"megahit "
"{params.input} "
......
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