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Cedric Midoux
workflow_metagenomics
Commits
573384cd
Commit
573384cd
authored
Jan 03, 2022
by
Cedric Midoux
Browse files
megahit-1.2.9
parent
cc6feb6b
Changes
1
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assembly.smk
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573384cd
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@@ -62,7 +62,7 @@ rule megahit:
input = lambda wildcards, input: "-1 %s -2 %s"%(",".join(input.R1), ",".join(input.R2)) if set(['R1', 'R2']).issubset(input.keys()) else "--12 %s"%",".join(input.R1R2),
output = lambda wildcards, output: os.path.dirname(str(output.contigs))
shell:
"conda activate megahit-1.2.
8
"
"conda activate megahit-1.2.
9
"
"&& "
"megahit "
"{params.input} "
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