Commit 40731f27 authored by Cedric Midoux's avatar Cedric Midoux
Browse files

.log/ --> LOGS/

parent 9f771191
...@@ -3,7 +3,7 @@ export PYTHONPATH='' ...@@ -3,7 +3,7 @@ export PYTHONPATH=''
source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4 conda activate snakemake-5.7.4
mkdir -p ./.log/out/ ./.log/err/ mkdir -p LOGS/snakemake/ LOGS/err/ LOGS/out/
snakemake \ snakemake \
--snakefile $1 \ --snakefile $1 \
......
{ {
"__default__" : "__default__" :
{ {
"out" : "./.log/out/", "out" : "LOGS/out/",
"err" : "./.log/err/", "err" : "LOGS/err/",
"queue" : "short.q,long.q,maiage.q", "queue" : "short.q,long.q,maiage.q",
"cluster" : "" "cluster" : ""
}, },
......
mkdir -p ./.log/out/ ./.log/err/ mkdir -p LOGS/snakemake
qsub -V -cwd -o ./.log/out/ -e ./.log/err/ -q maiage.q,long.q -N `basename $1` ../workflow_metagenomics/RunSnake.sh $1 qsub -V -cwd -o LOGS/snakemake/ -e LOGS/snakemake/ -q maiage.q,long.q -N `basename $1` ../workflow_metagenomics/RunSnake.sh $1
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