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Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
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Cedric Midoux
workflow_metagenomics
Commits
40731f27
Commit
40731f27
authored
Apr 09, 2021
by
Cedric Midoux
Browse files
.log/ --> LOGS/
parent
9f771191
Changes
3
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RunSnake.sh
View file @
40731f27
...
...
@@ -3,7 +3,7 @@ export PYTHONPATH=''
source
/usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
mkdir
-p
./.log/out/ ./.log/err
/
mkdir
-p
LOGS/snakemake/ LOGS/err/ LOGS/out
/
snakemake
\
--snakefile
$1
\
...
...
cluster.json
View file @
40731f27
{
"__default__"
:
{
"out"
:
"
./.log
/out/"
,
"err"
:
"
./.log
/err/"
,
"out"
:
"
LOGS
/out/"
,
"err"
:
"
LOGS
/err/"
,
"queue"
:
"short.q,long.q,maiage.q"
,
"cluster"
:
""
},
...
...
qsubSnake.sh
View file @
40731f27
mkdir
-p
./.log/out/ ./.log/err/
qsub
-V
-cwd
-o
./.log/out/
-e
./.log/err
/
-q
maiage.q,long.q
-N
`
basename
$1
`
../workflow_metagenomics/RunSnake.sh
$1
mkdir
-p
LOGS/snakemake
qsub
-V
-cwd
-o
LOGS/snakemake/
-e
LOGS/snakemake
/
-q
maiage.q,long.q
-N
`
basename
$1
`
../workflow_metagenomics/RunSnake.sh
$1
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