Commits · dev · Cedric Midoux / deepomics16S

30 May, 2022 1 commit
- Update README.md · 6b74e188
  Bize D'Avezac De Castera Ariane authored May 30, 2022
```
Adding the gzip command with *.fastq
```
  6b74e188
16 Jul, 2021 1 commit
- Update config.json · 02e968dd
  Slaheddine Kastalli authored Jul 16, 2021
  
  02e968dd
24 May, 2021 3 commits
- prepare the samples table · 0bb6d209
  Slaheddine Kastalli authored May 24, 2021
  
  0bb6d209
- Merge branch 'dev' of forgemia.inra.fr:cedric.midoux/dada2 into dev · 91688e8c
  Slaheddine Kastalli authored May 24, 2021
  
  91688e8c
- new modifications · a49ea56f
  Slaheddine Kastalli authored May 24, 2021
  
  a49ea56f
11 May, 2021 1 commit
- fastq extension added · ad63f178
  Bize D'Avezac De Castera Ariane authored May 11, 2021
  
  ad63f178
03 May, 2021 1 commit
- modifications · 1579db1f
  Slaheddine Kastalli authored May 03, 2021
  
  1579db1f
28 Apr, 2021 1 commit
- resolving core dump error · 7cc7db32
  Slaheddine Kastalli authored Apr 28, 2021
  
  7cc7db32
06 Apr, 2021 1 commit
- paired end · 97f9e08b
  Slaheddine Kastalli authored Apr 06, 2021
  
  97f9e08b
05 Apr, 2021 1 commit
- add rule · 3b152cbc
  Slaheddine Kastalli authored Apr 05, 2021
  
  3b152cbc
30 Mar, 2021 2 commits
- Update README.md · a360a180
  Slaheddine Kastalli authored Mar 29, 2021
  
  a360a180
- README modification · b10af531
  Slaheddine Kastalli authored Mar 30, 2021
  
  b10af531
29 Mar, 2021 1 commit
- README changes · 3034b24e
  Slaheddine Kastalli authored Mar 29, 2021
  
  3034b24e
24 Mar, 2021 10 commits
- prefetch rule · 831cbf13
  Slaheddine Kastalli authored Mar 24, 2021
  
  831cbf13
- add paired ends and prefetch rule · 7e4d83e6
  Slaheddine Kastalli authored Mar 24, 2021
  
  7e4d83e6
- README modification · 89a5a86f
  Slaheddine Kastalli authored Mar 24, 2021
  
  89a5a86f
- README modification · 08be075a
  Slaheddine Kastalli authored Mar 24, 2021
  
  08be075a
- README modification · de4ecd83
  Slaheddine Kastalli authored Mar 24, 2021
  
  de4ecd83
- README modification · b4d96723
  Slaheddine Kastalli authored Mar 24, 2021
  
  b4d96723
- README modification · aa3868fa
  Slaheddine Kastalli authored Mar 24, 2021
  
  aa3868fa
- README modification · 34b26177
  Slaheddine Kastalli authored Mar 24, 2021
  
  34b26177
- Merge branch 'dev' of forgemia.inra.fr:cedric.midoux/dada2 into dev · 38e2f9aa
  Slaheddine Kastalli authored Mar 24, 2021
  
  38e2f9aa
- README modification · 254025a7
  Slaheddine Kastalli authored Mar 24, 2021
  
  254025a7
23 Mar, 2021 17 commits
- Delete config · 4ee1731b
  Slaheddine Kastalli authored Mar 23, 2021
  
  4ee1731b
- Delete qsubSnake.sh · f4c9113b
  Slaheddine Kastalli authored Mar 23, 2021
  
  f4c9113b
- Delete metrics.R · 3c9b7b60
  Slaheddine Kastalli authored Mar 23, 2021
  
  3c9b7b60
- Delete makeSequenceTable.R · 9e76ea37
  Slaheddine Kastalli authored Mar 23, 2021
  
  9e76ea37
- Delete jobscript.sh · c02aaa31
  Slaheddine Kastalli authored Mar 23, 2021
  
  c02aaa31
- Delete filterAndTrim.R · 41e0c167
  Slaheddine Kastalli authored Mar 23, 2021
  
  41e0c167
- Delete dada2.R · 99cb417d
  Slaheddine Kastalli authored Mar 23, 2021
  
  99cb417d
- Delete RunSnake_report.sh · e4dff133
  Slaheddine Kastalli authored Mar 23, 2021
  
  e4dff133
- Delete RunSnake_printshellcmds.sh · 866eb24b
  Slaheddine Kastalli authored Mar 23, 2021
  
  866eb24b
- Delete RunSnake_printshellcmds-forceall.sh · 0bc19f2d
  Slaheddine Kastalli authored Mar 23, 2021
  
  0bc19f2d
- Delete RunSnake_graph.sh · 5423b762
  Slaheddine Kastalli authored Mar 23, 2021
  
  5423b762
- Delete RunSnake.sh · 24be4224
  Slaheddine Kastalli authored Mar 23, 2021
  
  24be4224
- Delete DADA2.Rproj · c2cc959b
  Slaheddine Kastalli authored Mar 23, 2021
  
  c2cc959b
- Delete quality.smk · f083191d
  Slaheddine Kastalli authored Mar 23, 2021
  
  f083191d
- Delete preprocess.smk · c79aa53b
  Slaheddine Kastalli authored Mar 23, 2021
  
  c79aa53b
- Delete global.smk · 95eb0173
  Slaheddine Kastalli authored Mar 23, 2021
  
  95eb0173
- Delete dada2.smk · f4b84729
  Slaheddine Kastalli authored Mar 23, 2021
  
  f4b84729