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Cedric Midoux
deepomics16S
Commits
e4dff133
Commit
e4dff133
authored
Mar 23, 2021
by
Slaheddine Kastalli
Browse files
Delete RunSnake_report.sh
parent
866eb24b
Changes
1
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workflow/script/RunSnake_report.sh
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866eb24b
#!/bin/bash
export
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
mkdir
-p
report/
snakemake
\
--snakefile
$1
\
--jobscript
jobscript.sh
\
--cluster-config
cluster.json
\
--report
report/
`
basename
$1
.smk
`
_report.html
\
--verbose
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