Commit b4d96723 authored by Slaheddine Kastalli's avatar Slaheddine Kastalli
Browse files

README modification

parent aa3868fa
......@@ -39,7 +39,7 @@ mkdir DATA
## Running snakemake manually
Once you have all the files, edit the config.json file with your raw fastq
* Example
````json
```json
{
"THREADS": 1,
"SAMPLES": ["SRR5625858"],
......@@ -47,8 +47,9 @@ Once you have all the files, edit the config.json file with your raw fastq
"THREE_PRIMER": {"SRR5625858": "ACTYAAAKGAATTGRCGGGG"},
"DATABASE": "/db/frogs_databanks/assignation/16S/silva_132_16S_pintail100/silva_132_16S_pintail100.fasta"
}
```
the fastq files must be located in the DATA folder and gz format.
In your terminal use this command
```shell
......
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