Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
Open sidebar
Cedric Midoux
deepomics16S
Commits
b4d96723
Commit
b4d96723
authored
Mar 24, 2021
by
Slaheddine Kastalli
Browse files
README modification
parent
aa3868fa
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
b4d96723
...
...
@@ -39,7 +39,7 @@ mkdir DATA
## Running snakemake manually
Once you have all the files, edit the config.json file with your raw fastq
*
Example
```
`
json
```
json
{
"THREADS"
:
1
,
"SAMPLES"
:
[
"SRR5625858"
],
...
...
@@ -47,8 +47,9 @@ Once you have all the files, edit the config.json file with your raw fastq
"THREE_PRIMER"
:
{
"SRR5625858"
:
"ACTYAAAKGAATTGRCGGGG"
},
"DATABASE"
:
"/db/frogs_databanks/assignation/16S/silva_132_16S_pintail100/silva_132_16S_pintail100.fasta"
}
```
the fastq files must be located in the DATA folder and gz format.
In your terminal use this command
```
shell
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment