Delete global.smk

workflow/rules/global.smk

-shell.executable("/bin/bash")
-shell.prefix("source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh;")
-
-configfile: "./config.json"
-
-SAMPLES=config["SAMPLES"]
-
-rule all:
-	input:
-		"report/multiqc_report.html",
-		expand("work/dada/{sample}.rds", sample=SAMPLES),
-		"work/dada/seqtab.fasta",
-		"work/dada/seqtab.tsv",
-		"work/dada/metrics.tsv",
-		"work/FROGS/affiliation.biom",
-		"report/clusters_metrics.html",
-		"report/affiliations_metrics.html",
-		"report/abundance.biom",
-		"report/abundance.tsv",
-		# "report/tree.nwk"
-
-include: "quality.smk"
-include: "preprocess.smk"
-include: "dada2.smk"
-include: "affiliation.smk"