Commit 831cbf13 authored by Slaheddine Kastalli's avatar Slaheddine Kastalli
Browse files

prefetch rule

parent 7e4d83e6
...@@ -8,7 +8,7 @@ rule prefetch: ...@@ -8,7 +8,7 @@ rule prefetch:
shell: shell:
"conda activate sra-tools-2.10.1 " "conda activate sra-tools-2.10.1 "
"&& " "&& "
"prefetch {params} > {log} 2>&1 && touch {output} " "prefetch {params} > {log} 2>&1 && touch {output} "
"&& " "&& "
"conda deactivate " "conda deactivate "
...@@ -25,6 +25,6 @@ rule fastqdump: ...@@ -25,6 +25,6 @@ rule fastqdump:
shell: shell:
"conda activate sra-tools-2.10.1 " "conda activate sra-tools-2.10.1 "
"&& " "&& "
"fasterq-dump {params.args} {params.id_srr} > {log} 2>&1 " "fasterq-dump {params.args} {params.id_srr} > {log} 2>&1 "
"&& " "&& "
"conda deactivate " "conda deactivate "
\ No newline at end of file
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