Commit 7cc7db32 authored by Slaheddine Kastalli's avatar Slaheddine Kastalli
Browse files

resolving core dump error

parent 97f9e08b
...@@ -9,7 +9,7 @@ snakemake \ ...@@ -9,7 +9,7 @@ snakemake \
--snakefile $1 \ --snakefile $1 \
--jobscript jobscript.sh \ --jobscript jobscript.sh \
--cluster-config cluster.json \ --cluster-config cluster.json \
--cluster "qsub -V -cwd -N {rule} -o {cluster.out} -e {cluster.err} -q {cluster.queue} -pe thread {threads} {cluster.cluster}" \ --cluster "qsub -V -cwd -N {rule} -o {cluster.out} -e {cluster.err} -l big_mem -q {cluster.queue} -pe thread {threads} {cluster.cluster}" \
--keep-going \ --keep-going \
--restart-times 5 \ --restart-times 5 \
--jobs 80 \ --jobs 80 \
......
...@@ -3,7 +3,7 @@ ...@@ -3,7 +3,7 @@
{ {
"out" : "LOGS/", "out" : "LOGS/",
"err" : "LOGS/", "err" : "LOGS/",
"queue" : "short.q,long.q,maiage.q", "queue" : "long.q",
"cluster" : "" "cluster" : ""
} }
} }
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