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Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
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Cedric Midoux
deepomics16S
Commits
4a18f66e
Commit
4a18f66e
authored
Feb 25, 2021
by
Cedric Midoux
Browse files
tree.nwk
parent
0e6242bf
Changes
1
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affiliation.smk
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4a18f66e
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@@ -55,7 +55,8 @@ rule tree:
biom = "work/FROGS/affiliation.biom"
output:
html = "work/FROGS/tree.html",
nwk = "work/FROGS/tree.nwk"
nwk = "work/FROGS/tree.nwk",
log = "work/FROGS/tree.log"
threads:
config["THREADS"]
shell:
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@@ -63,10 +64,11 @@ rule tree:
"&& "
"tree.py "
"--nb-cpus {threads} "
"--input-sequences {input.fasta} "
"--biom-file {input.biom} "
"--html {output.html} "
"--input-otu {input.fasta} "
"--biomfile {input.biom} "
"--out-tree {output.nwk} "
"--html {output.html} "
"--log-file {output.log}"
"&& "
"conda deactivate"
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