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Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
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Cedric Midoux
deepomics16S
Commits
2293e9d4
Commit
2293e9d4
authored
Jan 28, 2021
by
Cedric Midoux
Browse files
snakemake-5.7.4
parent
a5dc5a35
Changes
7
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RunSnake.sh
View file @
2293e9d4
#!/bin/bash
export
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
mkdir
-p
./.log/out/ ./.log/err/
#PYTHONPATH=''
source
/usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
snakemake
\
--snakefile
$1
\
...
...
RunSnake_graph.sh
View file @
2293e9d4
#!/bin/bash
export
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
mkdir
-p
report/
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
snakemake
\
--snakefile
$1
\
...
...
RunSnake_printshellcmds-forceall.sh
View file @
2293e9d4
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
#!/bin/bash
export
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
snakemake
\
--snakefile
$1
\
...
...
RunSnake_printshellcmds.sh
View file @
2293e9d4
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
#!/bin/bash
export
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
snakemake
\
--snakefile
$1
\
...
...
RunSnake_report.sh
View file @
2293e9d4
#!/bin/bash
export
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
mkdir
-p
report/
PYTHONPATH
=
''
source
/usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
snakemake
\
--snakefile
$1
\
...
...
global.smk
View file @
2293e9d4
configfile: "./config.json"
MEM=config["MEM"]
SAMPLES=config["SAMPLES"]
rule all:
...
...
jobscript.sh
View file @
2293e9d4
#!/bin/sh
# properties = {properties}
export
PYTHONPATH
=
''
source
activate snakemake-5.4.5
source
/usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
{
exec_job
}
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