snakemake-5.7.4

RunSnake.sh

+#!/bin/bash
+export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
+conda activate snakemake-5.7.4
+
 mkdir -p ./.log/out/ ./.log/err/
-#PYTHONPATH=''
-source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
 
 snakemake \
 --snakefile $1 \

RunSnake_graph.sh

+#!/bin/bash
+export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
+conda activate snakemake-5.7.4
+
 mkdir -p report/
-PYTHONPATH=''
-source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
 
 snakemake \
 --snakefile $1 \

RunSnake_printshellcmds-forceall.sh

-PYTHONPATH=''
-source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
+#!/bin/bash
+export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
+conda activate snakemake-5.7.4
 
 snakemake \
 --snakefile $1 \

RunSnake_printshellcmds.sh

-PYTHONPATH=''
-source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
+#!/bin/bash
+export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
+conda activate snakemake-5.7.4
 
 snakemake \
 --snakefile $1 \

RunSnake_report.sh

+#!/bin/bash
+export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
+conda activate snakemake-5.7.4
+
 mkdir -p report/
-PYTHONPATH=''
-source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
 
 snakemake \
 --snakefile $1 \

global.smk

 configfile: "./config.json"
 
-MEM=config["MEM"]
 SAMPLES=config["SAMPLES"]
 
 rule all:

jobscript.sh

 #!/bin/sh
 # properties = {properties}
 export PYTHONPATH=''
-source activate snakemake-5.4.5
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
+conda activate snakemake-5.7.4
 {exec_job}