RunSnake_report.sh 263 Bytes
Newer Older
Cedric Midoux's avatar
Cedric Midoux committed
1
2
3
4
5
6
7
8
9
10
mkdir -p report/
PYTHONPATH=''
source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda

snakemake \
--snakefile $1 \
--jobscript jobscript.sh \
--cluster-config cluster.json \
--report report/`basename $1 .smk`_report.html \
--verbose