From c05b081b937579f3e8440e23ad53899a959a485a Mon Sep 17 00:00:00 2001
From: DUGAT-BONY Eric <eric.dugat-bony@inrae.fr>
Date: Fri, 17 Jan 2025 17:42:13 +0100
Subject: [PATCH] Update file README.md

---
 README.md | 7 -------
 1 file changed, 7 deletions(-)

diff --git a/README.md b/README.md
index d4c3c19..0ab04a3 100644
--- a/README.md
+++ b/README.md
@@ -84,13 +84,6 @@ conda deactivate
 ```
 
 ## Viral metagenomic analysis
-
-Raw data were decontaminated by removing reads originating from carrots, cabbage, and turnip, as well as low-quality reads, in order to assemble the reads into contigs. Contigs longer than 2 kb were selected, and viral contigs were identified.
-
-All contigs larger than 2 kb were concatenated and dereplicated to retain only one vOTU. The cleaned reads were then mapped to the vOTUs to generate an abundance table of vOTUs in the samples.
-
-The abundance table was processed using the Virome_analyses_2024.rmd script in RStudio to create phyloseq objects for DNA- and RNA-amplified samples.
-
 ### Reads QC
 For each sample, raw reads were quality quality checked using [FastQC](https://github.com/s-andrews/FastQC) version 0.11.9, and the results were saved in `results/FastQC_report`. Here is the command line:
 ```
-- 
GitLab