diff --git a/tags/drap-v1.91/bin/submitJob b/tags/drap-v1.91/bin/submitJob index ca2315965ed2732d57e375efc7b1d9f8438f6017..d4cc85b0ef33bf88e74d678aba504eb3a0eea2d8 100755 --- a/tags/drap-v1.91/bin/submitJob +++ b/tags/drap-v1.91/bin/submitJob @@ -90,8 +90,11 @@ if ($command) { } (my $h_vmem = $opt->{resources}) =~ s/.*h_vmem=(\d+)G.*/$1/; -($h_vmem ||= $opt->{options}) =~ s/.*h_vmem=(\d+)G.*/$1/; -$opt->{queue} ||= $h_vmem && $h_vmem > $node_max_mem ? $mem_queue : $default_queue; +(my $n_cpu) = $opt->{resources} =~ /.*-pe parallel_\w+ (\d+).*/; +($h_vmem = $opt->{options}) =~ s/.*h_vmem=(\d+)G.*/$1/ unless ($h_vmem); +($n_cpu) = $opt->{options} =~ /.*-pe parallel_\w+ (\d+).*/ unless ($n_cpu); +$n_cpu ||= 1; +$opt->{queue} ||= $h_vmem && $h_vmem * $n_cpu > $node_max_mem ? $mem_queue : $default_queue; $opt->{sync} = 'y' if (defined($opt->{sync})); my @arguments; foreach my $option (@sge_opt_order) { diff --git a/trunk/bin/submitJob b/trunk/bin/submitJob index ca2315965ed2732d57e375efc7b1d9f8438f6017..d4cc85b0ef33bf88e74d678aba504eb3a0eea2d8 100755 --- a/trunk/bin/submitJob +++ b/trunk/bin/submitJob @@ -90,8 +90,11 @@ if ($command) { } (my $h_vmem = $opt->{resources}) =~ s/.*h_vmem=(\d+)G.*/$1/; -($h_vmem ||= $opt->{options}) =~ s/.*h_vmem=(\d+)G.*/$1/; -$opt->{queue} ||= $h_vmem && $h_vmem > $node_max_mem ? $mem_queue : $default_queue; +(my $n_cpu) = $opt->{resources} =~ /.*-pe parallel_\w+ (\d+).*/; +($h_vmem = $opt->{options}) =~ s/.*h_vmem=(\d+)G.*/$1/ unless ($h_vmem); +($n_cpu) = $opt->{options} =~ /.*-pe parallel_\w+ (\d+).*/ unless ($n_cpu); +$n_cpu ||= 1; +$opt->{queue} ||= $h_vmem && $h_vmem * $n_cpu > $node_max_mem ? $mem_queue : $default_queue; $opt->{sync} = 'y' if (defined($opt->{sync})); my @arguments; foreach my $option (@sge_opt_order) {