Sarah Maman-Haddad (19343e4f) at 16 May 16:20
(minor) Complete binaries list to precise in the config_calling.yam...
Mathieu Charles (9758d184) at 10 May 14:08
first push of GATK4 version
In sample.tsv header, replace "name" by "sample_name" (because table dataframe attribute is "sample_name" ligne 133 of Snakefile_calling file).
In sample.tsv header, replace "name" by "sample_name" (because table dataframe attribute is "sample_name" ligne 133 of Snakefile_calling file).
Sarah Maman-Haddad (47dd6116) at 09 May 09:41
Remove spaces before and after I and O argments in CleanSam comman...
Sarah Maman-Haddad (d6ad568c) at 06 May 10:48
(minor) check make Results/Fai_Dict_Index/ directory. Error messag...
Sarah Maman-Haddad (90a08e59) at 06 May 09:38
Complete binaries list to precise in the config_calling.yaml file.
Sarah Maman-Haddad (801d22ef) at 04 May 17:22
Replace count = get_RSEM_res (ligne 453) by because count is reser...
In sample.tsv header, replace "name" by "sample_name" (because table dataframe attribute is "sample_name" ligne 133 of Snakefile_calling file).
Sarah Maman-Haddad (8d45e431) at 04 May 17:13
In sample.tsv header, replace "name" by "sample_name" (because tabl...
Sarah Maman-Haddad (d029c21e) at 04 May 15:54
singulatiry_img replace by singularity_img
Sarah Maman-Haddad (4bea8745) at 04 May 15:53
(minor) l.18 singulatiry_img replace by singularity_img
Maria Bernard (fd0c4990) at 21 Oct 15:40
update ASE workflow
Maria Bernard (42f62285) at 12 May 11:23
IMAGE_calling : addstand call conf option to GenotypeGVCF
Maria Bernard (02b30b7a) at 12 May 11:21
IMAGE_calling : remove stand call conf option from Haplotype caller.
Maria Bernard (eef374cd) at 28 Apr 18:01
Update Snakefile_calling : correclyt use stand_call_conf option
Maria Bernard (de090dce) at 09 Apr 12:16
Merge branch 'develop' of forgemia.inra.fr:bios3biol/workflows into...
... and 1 more commit
Maria Bernard (0aea4054) at 09 Apr 12:13
change default value