Commit e6e1a476 authored by Claire Hoede's avatar Claire Hoede
Browse files

improve description format

parent ea833e23
......@@ -30,13 +30,13 @@ __synopsis__ = "getNbAllAllelesFromVcf.py INPUT --output OUTPUT"
__date__ = "02/2015"
__authors__ = "Claire Hoede"
__keywords__ = "genotype, vcf, reads for each alleles"
__description__ = "Write a tabulated file with count"\
"of each read for each alternative allele whatever the alleles number."\
"The objective is to import the file in R to compute real alleles frequencies."\
"Columns in the output file will be"\
"#chrom #pos #nbAltAll #DPTotal #nbRef #nbAlt1 ... #nbAltn"\
"WARNING : for this first version your vcf file has to have only one sample"\
"In the output file column not used for a variant is filled by NA"
__description__ = """Write a tabulated file with count
of each read for each alternative allele whatever the alleles number.
The objective is to import the file in R to compute real alleles frequencies.
Columns in the output file will be
#chrom #pos #nbAltAll #DPTotal #nbRef #nbAlt1 ... #nbAltn
WARNING : for this first version your vcf file has to have only one sample
In the output file column not used for a variant is filled by NA"""
def get_args():
"""
......
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