Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
bios4biol
bioinfo-utils
Commits
e6e1a476
Commit
e6e1a476
authored
Feb 19, 2015
by
Claire Hoede
Browse files
improve description format
parent
ea833e23
Changes
1
Hide whitespace changes
Inline
Side-by-side
bin/getNbAllAllelesFromVcf.py
View file @
e6e1a476
...
...
@@ -30,13 +30,13 @@ __synopsis__ = "getNbAllAllelesFromVcf.py INPUT --output OUTPUT"
__date__
=
"02/2015"
__authors__
=
"Claire Hoede"
__keywords__
=
"genotype, vcf, reads for each alleles"
__description__
=
"Write a tabulated file with count
"
\
"
of each read for each alternative allele whatever the alleles number.
"
\
"
The objective is to import the file in R to compute real alleles frequencies.
"
\
"
Columns in the output file will be
"
\
"
#chrom #pos #nbAltAll #DPTotal #nbRef #nbAlt1 ... #nbAltn
"
\
"
WARNING : for this first version your vcf file has to have only one sample
"
\
"
In the output file column not used for a variant is filled by NA"
__description__
=
""
"Write a tabulated file with count
of each read for each alternative allele whatever the alleles number.
The objective is to import the file in R to compute real alleles frequencies.
Columns in the output file will be
#chrom #pos #nbAltAll #DPTotal #nbRef #nbAlt1 ... #nbAltn
WARNING : for this first version your vcf file has to have only one sample
In the output file column not used for a variant is filled by NA"
""
def
get_args
():
"""
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment