feature_coordinates in annot and vignette input corrections

.Rbuildignore

+^.*\.Rproj$
+^\.Rproj\.user$

.gitignore

+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

R/genome_features_overlaps.R

@@ -116,12 +116,30 @@ setMethod("genome_features_overlaps",definition=function(peaks,features,figs_pat
           feature_coverage=base::round(overlaps_length/IRanges::width(
           subject[S4Vectors::subjectHits(hits)])*100,digits=2)
 
+          ###################
+          # subject_coordinates
+          feature_coordinates=data.table::data.table(
+            base::as.data.frame(
+               subject[S4Vectors::subjectHits(hits)]
+            )
+          )
+
+          ###################
+          # subject_coordinates collapse
+          feature_coordinates=base::paste(
+            feature_coordinates$seqnames,
+            feature_coordinates$start,
+            feature_coordinates$end,
+            feature_coordinates$strand,
+          sep=":")
+
           ###################
           # convert to table
           Data<-data.table::data.table(
             feature_type=y,
             query_DT[S4Vectors::queryHits(hits)],
             subject_DT[S4Vectors::subjectHits(hits)],
+            feature_coordinates,
             peak_coverage,
             feature_coverage
           )