Commit 7ad710a3 authored by Aurelien Brionne's avatar Aurelien Brionne
Browse files

buil_genome_feature update par R3.5

parent 84cd943e
......@@ -98,7 +98,7 @@ setMethod("build_genome_features",definition=function(txdb,features,parameters)
###################
# convert to table
promoters_DT<-data.table::data.table(AnnotationDbi::as.data.frame(promoters))[,.(tx_id,tx_name)]
promoters_DT<-data.table::data.table(AnnotationDbi::as.data.frame(promoters,row.names = NULL))[,.(tx_id,tx_name)]
###################
# convert to character
......@@ -140,7 +140,7 @@ setMethod("build_genome_features",definition=function(txdb,features,parameters)
###################
# convert to table
downstream_DT<-data.table::data.table(AnnotationDbi::as.data.frame(downstream))[,.(tx_id,tx_name)]
downstream_DT<-data.table::data.table(AnnotationDbi::as.data.frame(downstream,,row.names = NULL))[,.(tx_id,tx_name)]
###################
# convert to character
......@@ -181,7 +181,7 @@ setMethod("build_genome_features",definition=function(txdb,features,parameters)
###################
# convert to table
UTR5_DT<-data.table::data.table(BiocGenerics::as.data.frame(UTR5))[,.(group_name,exon_rank)]
UTR5_DT<-data.table::data.table(BiocGenerics::as.data.frame(UTR5,,row.names = NULL))[,.(group_name,exon_rank)]
###################
# convert to GRanges
......@@ -217,7 +217,7 @@ setMethod("build_genome_features",definition=function(txdb,features,parameters)
###################
# convert to table
UTR3_DT<-data.table::data.table(AnnotationDbi::as.data.frame(UTR3))[,.(group_name,exon_rank)]
UTR3_DT<-data.table::data.table(AnnotationDbi::as.data.frame(UTR3,,row.names = NULL))[,.(group_name,exon_rank)]
###################
# convert to GRanges
......@@ -253,7 +253,7 @@ setMethod("build_genome_features",definition=function(txdb,features,parameters)
###################
# convert to table
exons_DT<-data.table::data.table(AnnotationDbi::as.data.frame(exons))[,.(group_name,exon_rank)]
exons_DT<-data.table::data.table(AnnotationDbi::as.data.frame(exons,row.names = NULL))[,.(group_name,exon_rank)]
###################
# convert to GRanges
......@@ -298,7 +298,7 @@ setMethod("build_genome_features",definition=function(txdb,features,parameters)
###################
# convert to table
introns_DT<-data.table::data.table(AnnotationDbi::as.data.frame(introns))[,.(group_name,strand)]
introns_DT<-data.table::data.table(AnnotationDbi::as.data.frame(introns,row.names = NULL))[,.(group_name,strand)]
###################
# convert to GRanges
......@@ -352,7 +352,7 @@ setMethod("build_genome_features",definition=function(txdb,features,parameters)
###################
# convert to table
cds_DT<-data.table::data.table(AnnotationDbi::as.data.frame(cds))[,.(group_name,exon_rank)]
cds_DT<-data.table::data.table(AnnotationDbi::as.data.frame(cds,row.names = NULL))[,.(group_name,exon_rank)]
###################
# convert to GRanges
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment