RAPPEL : Opération de maintenance > ForgeMIA indisponible le 20 Janvier entre 7h et 12h

Commit 55e7f3d8 authored by Aurelien Brionne's avatar Aurelien Brionne
Browse files

update

parent 38158545
...@@ -4,7 +4,7 @@ ...@@ -4,7 +4,7 @@
#' @importFrom AnnotationDbi select keys as.data.frame metadata #' @importFrom AnnotationDbi select keys as.data.frame metadata
#' @importFrom GenomicFeatures promoters transcripts fiveUTRsByTranscript threeUTRsByTranscript exonsBy intronsByTranscript cdsBy #' @importFrom GenomicFeatures promoters transcripts fiveUTRsByTranscript threeUTRsByTranscript exonsBy intronsByTranscript cdsBy
#' @importFrom GenomicRanges flank #' @importFrom GenomicRanges flank
#' @import rtracklayer #' @importFrom rtracklayer import
#' @importFrom BiocGenerics as.data.frame #' @importFrom BiocGenerics as.data.frame
#' @importFrom methods new #' @importFrom methods new
#' @import data.table #' @import data.table
......
...@@ -225,7 +225,7 @@ setMethod("genome_features_overlaps",definition=function(peaks,features,figs_pat ...@@ -225,7 +225,7 @@ setMethod("genome_features_overlaps",definition=function(peaks,features,figs_pat
# merge with overlapped features # merge with overlapped features
annot<-merge( annot<-merge(
annot, annot,
features@gene_table[,.(type,gene_name,transcript_id,gene_id)], base::unique(features@gene_table[!is.na(transcript_id),.(type,gene_name,transcript_id,gene_id)]),
by.x="tx_name", by.x="tx_name",
by.y="transcript_id", by.y="transcript_id",
all.x=T, all.x=T,
......
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