convert seqnames to character in genome_features_overlaps

R/genome_features_overlaps.R

@@ -264,9 +264,13 @@ setMethod(
     pos=base::which("feature"==base::names(annot))
 
     ###################
-    #reorder annot
+    # reorder annot
     annot<-annot[,base::c(2:pos,1,(pos+1):base::ncol(annot)),with=FALSE]
 
+    ###################
+    # convert seqnames to character
+    annot[,seqnames:=base::as.character(seqnames)]
+
   ###################
   # feature distribution (transcript level)
   ###################