vignette

NAMESPACE

@@ -7,6 +7,7 @@ export(build_genome_features)
 export(genome_features_overlaps)
 export(readPeakFile)
 import(data.table)
+import(rtracklayer)
 importFrom(AnnotationDbi,as.data.frame)
 importFrom(AnnotationDbi,keys)
 importFrom(AnnotationDbi,metadata)
@@ -38,4 +39,3 @@ importFrom(methods,slot)
 importFrom(methods,slotNames)
 importFrom(plotly,layout)
 importFrom(plotly,plot_ly)
-importFrom(rtracklayer,import)

vignettes/introduction.Rmd

@@ -94,34 +94,6 @@ toplevel=GenomicFeatures::makeTxDbFromGFF(
   taxonomyId=9031,
   dbxrefTag="ID"
 )
-
-toplevel=GenomicFeatures::makeTxDbFromGFF(
-  file=file,
-  format="gff",
-  organism="Gallus gallus",
-  taxonomyId=9031,
-  dbxrefTag="ID"
-)
-
-
-
-file="/home/abrionne/Documents/SAVE_uraanabioinfo/programmes_R/GenomeFeatures/inst/extdata/data/input/galGal5.gff"
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
 ```
 
 Now, we build a convenient object with `GenomeFeatures::build_genome_features`, needed for find overlaps beetween all selected features and genomic coordinates targets into a single step (see below).