Commit 38158545 authored by Aurelien Brionne's avatar Aurelien Brionne
Browse files

vignette

parent 1c2ba595
......@@ -7,6 +7,7 @@ export(build_genome_features)
export(genome_features_overlaps)
export(readPeakFile)
import(data.table)
import(rtracklayer)
importFrom(AnnotationDbi,as.data.frame)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,metadata)
......@@ -38,4 +39,3 @@ importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(rtracklayer,import)
......@@ -94,34 +94,6 @@ toplevel=GenomicFeatures::makeTxDbFromGFF(
taxonomyId=9031,
dbxrefTag="ID"
)
toplevel=GenomicFeatures::makeTxDbFromGFF(
file=file,
format="gff",
organism="Gallus gallus",
taxonomyId=9031,
dbxrefTag="ID"
)
file="/home/abrionne/Documents/SAVE_uraanabioinfo/programmes_R/GenomeFeatures/inst/extdata/data/input/galGal5.gff"
```
Now, we build a convenient object with `GenomeFeatures::build_genome_features`, needed for find overlaps beetween all selected features and genomic coordinates targets into a single step (see below).
......
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