Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Pour information : coupure de la forge ce matin entre 6h45 et 7h05 pour une mise à jour de sécurité
Open sidebar
Aurelien Brionne
GenomeFeatures
Commits
38158545
Commit
38158545
authored
Dec 21, 2018
by
Aurelien Brionne
Browse files
vignette
parent
1c2ba595
Changes
2
Hide whitespace changes
Inline
Side-by-side
NAMESPACE
View file @
38158545
...
...
@@ -7,6 +7,7 @@ export(build_genome_features)
export(genome_features_overlaps)
export(readPeakFile)
import(data.table)
import(rtracklayer)
importFrom(AnnotationDbi,as.data.frame)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,metadata)
...
...
@@ -38,4 +39,3 @@ importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(rtracklayer,import)
vignettes/introduction.Rmd
View file @
38158545
...
...
@@ -94,34 +94,6 @@ toplevel=GenomicFeatures::makeTxDbFromGFF(
taxonomyId=9031,
dbxrefTag="ID"
)
toplevel=GenomicFeatures::makeTxDbFromGFF(
file=file,
format="gff",
organism="Gallus gallus",
taxonomyId=9031,
dbxrefTag="ID"
)
file="/home/abrionne/Documents/SAVE_uraanabioinfo/programmes_R/GenomeFeatures/inst/extdata/data/input/galGal5.gff"
```
Now, we build a convenient object with `GenomeFeatures::build_genome_features`, needed for find overlaps beetween all selected features and genomic coordinates targets into a single step (see below).
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment