summary upgrade

R/genome_features_overlaps.R

@@ -232,7 +232,7 @@ setMethod("genome_features_overlaps",definition=function(peaks,features,figs_pat
     annot<-annot[,c(2:pos,1,(pos+1):base::ncol(annot)),with=F]
 
   ###################
-  # feature distribution
+  # feature distribution (transcript level)
   ###################
 
     ###################
@@ -289,7 +289,7 @@ setMethod("genome_features_overlaps",definition=function(peaks,features,figs_pat
     # plot colors to display
     #colors=getCols(base::nlevels(Data$feature))
     colors=getCols(base::length(Features))
-    
+
     ###################
     # features in bar
     ###################

R/overlapped_genome_features.R

@@ -48,7 +48,7 @@ setMethod("show", "overlapped_genome_features",function(object) {
 
   ###################
   # print short report
-  base::cat("\n-features count:",sep="\n")
+  base::cat("\n-features count (transcript level):",sep="\n")
 
   ###################
   # extract distributions
@@ -60,7 +60,7 @@ setMethod("show", "overlapped_genome_features",function(object) {
 
   ###################
   # print short report
-  base::cat("\n-features frequency:",sep="\n")
+  base::cat("\n-features frequency  (transcript level):",sep="\n")
 
   ###################
   # display features frequency