Commit 235b21f0 authored by Aurelien Brionne's avatar Aurelien Brionne
Browse files

vignette correction

parent 8541f321
......@@ -44,15 +44,15 @@ At the first step we read peaks files (also known bed files with genomic coordin
###################
# load peak files
peaks=base::list(
H3K4Me3_J1=GenomeFeatures::readPeakFile(
A=GenomeFeatures::readPeakFile(
base::system.file(
"/extdata/data/input/H3K4Me3.bed",
"extdata/data/input/A.bed",
package="GenomeFeatures"
)
),
H3K4Me3_J35=GenomeFeatures::readPeakFile(
B=GenomeFeatures::readPeakFile(
base::system.file(
"extdata/data/input/H3K27Me3.bed",
"extdata/data/input/B.bed",
package="GenomeFeatures"
)
)
......@@ -188,12 +188,12 @@ annot
We can also display the `UpSetR::upset` plot previously built by`GenomeFeatures::genome_features_overlaps`.
* H3K4Me3_A_J1
* A
<img src="`r base::system.file("extdata/data/output/upset_H3K4Me3_J1.png",package="GenomeFeatures")`" alt="Drawing" style="width: 800px;"/>
<img src="`r base::system.file("extdata/data/output/upset_A.png",package="GenomeFeatures")`" alt="Drawing" style="width: 800px;"/>
* H3K4Me3_A_J35
* B
<img src="`r base::system.file("extdata/data/output/upset_H3K4Me3_J35.png",package="GenomeFeatures")`" alt="Drawing" style="width: 800px;"/>
<img src="`r base::system.file("extdata/data/output/upset_B.png",package="GenomeFeatures")`" alt="Drawing" style="width: 800px;"/>
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