update dynamics testing

src/main/java/fr/inrae/agriterix/simulator/dynamics/PopulationDynamics.java

@@ -15,6 +15,7 @@ import java.util.ArrayList;
 import java.util.List;
 import java.util.Map;
 
+@Deprecated
 public class PopulationDynamics extends Dynamics {
 
     // incoming simulation parameters, may be replaced by complex functions

src/test/java/fr/inrae/agriterix/simulator/SimulatorTest.java

@@ -8,6 +8,7 @@ import fr.inrae.agriterix.simulator.dynamics.*;
 
 import java.io.*;
 
+import fr.inrae.agriterix.simulator.dynamics.transmission.TransmissionTendancy;
 import org.apache.commons.lang3.RandomStringUtils;
 import org.junit.*;
 
@@ -71,6 +72,7 @@ public class SimulatorTest {
         vergerT.addTag(Tag.B);
 
         List<Product> products = Arrays.asList(ble, mais, fourrage, legumes, verger, vergerT, legumesT, bleT);
+        List<Product> productsL = Arrays.asList(ble, mais, fourrage, legumes, verger);
 
         List<Product> transformed = Arrays.asList(new Product("Jus", Unit.L), new Product("Bière", Unit.L),
                 new Product("Pain", Unit.Kg), new Product("Nuggets", Unit.Kg), new Product("Soupe",
@@ -117,7 +119,11 @@ public class SimulatorTest {
         }
 
         List<Dynamics> dynamics = new ArrayList<>();
-        dynamics.add(new PopulationDynamics());
+        //        dynamics.add(new PopulationDynamics());
+        dynamics.add(new PopulationDynamicsByAgeClass(
+                5.31966309e-04, 3.02391767e+01, 3.89377418e-01, 7.46514412e+00, 4.27098464e+01, 1.58988450e-01,
+                new TransmissionTendancy(0.5, 0.5, 3, createTransMatrix(productsL))
+        ));
         dynamics.add(new ProductionDynamics());
         dynamics.add(new MarketDynamics());
         dynamics.add(new FlowDynamics());
@@ -128,6 +134,24 @@ public class SimulatorTest {
         directory = simulator.getTimestampDirectory();
     }
 
+    public static Map<String, Map<String, Double>> createTransMatrix(List<Product> products) throws IOException {
+        // for test minimal
+        XStream xStream = new XStream();
+        XStream.setupDefaultSecurity(xStream);
+        xStream.allowTypesByRegExp(new String[]{".*"});
+
+        Map<String, Map<String, Double>> transitions = new ConcurrentHashMap<>();
+
+        for (int i = 0; i < products.size(); i++) {
+            Map<String, Double> transitionsP = new ConcurrentHashMap<>();
+            for (int j = 0; j < products.size(); j++) {
+                transitionsP.put(products.get(j).getLabel(), i == j ? 0.9 : 0.1 / (products.size() - 1));
+            }
+            transitions.put(products.get(i).getLabel(), transitionsP);
+        }
+        return transitions;
+    }
+
     @After
     public void tearDown() {
     }