Commits · f7ef4771a7619296cf5c129ffec984908306c279 · QTL / spell-qtl

06 Apr, 2017 3 commits
- fixes [#3434]. · f7ef4771
  Damien Leroux authored Apr 06, 2017
  
  f7ef4771
- fixes [#3430] · 658049f5
  Damien Leroux authored Apr 06, 2017
  
  658049f5
- closes [#3437] · cbe99d99
  Damien Leroux authored Apr 06, 2017
  
  cbe99d99
21 Mar, 2017 1 commit
- Now handling pleiotropy, covariables, and defining subsets to work on in commandline. · 9f008bbc
  Damien Leroux authored Mar 21, 2017
  
  9f008bbc
23 Feb, 2017 1 commit
- Added some simulated data and a hidden output in spell-marker to double-check the results. · 90db7d98
  Damien Leroux authored Feb 21, 2017
  
  90db7d98
07 Jan, 2017 3 commits
- Oops. Had forgotten to give the proper URI to the workers in SGE mode. · 0c100333
  Damien Leroux authored Jan 07, 2017
  
  0c100333
- Replaced FIFO with TCP server/client. · 79fc7b44
  damien authored Jan 07, 2017
```
FIFO can't work across multiple machines. It was a stupid design idea.
```
  79fc7b44
- Fixing compilation and SGE behaviour on cluster. · d4bb818a
  Damien Leroux authored Jan 07, 2017
  
  d4bb818a
06 Jan, 2017 1 commit
- Little tweaks to the manpages. · e96ae544
  damien authored Jan 05, 2017
  
  e96ae544
03 Jan, 2017 8 commits
- Fixed manpage (removed popdata argument) and cmakefile. · 5ec867ec
  damien authored Jan 03, 2017
  
  5ec867ec
- Set tag for alpha release. · 27dfef91
  damien authored Jan 03, 2017
  
  27dfef91
- Added examples and R script to package. · 6ef8d0f5
  damien authored Jan 03, 2017
  
  6ef8d0f5
- Added F3-outbred example. · 4637465c
  damien authored Jan 03, 2017
  
  4637465c
- About ready to tag for alpha release. · d7301388
  damien authored Jan 03, 2017
  
  d7301388
- Added script to compare 1-point and n-point. · 4146ad9e
  damien authored Jan 03, 2017
  
  4146ad9e
- Organized the output files and added a log file for spell-qtl. · 6d23722a
  damien authored Jan 02, 2017
  
  6d23722a
- Added lineobs to tweak the output .gen files and allow for proper 02 obs. · 7d15b909
  damien authored Jan 02, 2017
  
  7d15b909
30 Dec, 2016 1 commit
- Fixed few things in the CLIs and added man pages. · cb9155a2
  damien authored Dec 30, 2016
  
  cb9155a2
29 Dec, 2016 1 commit
- Added rough packaging instructions. · 9582208e
  damien authored Dec 29, 2016
  
  9582208e
28 Dec, 2016 2 commits
- Added output options for spell-marker. Untested. · 4685f2c6
  damien authored Dec 28, 2016
  
  4685f2c6
- Added missing file. · 8fecadf0
  damien authored Dec 28, 2016
  
  8fecadf0
22 Dec, 2016 2 commits
- Commented out some CLI options and completed format CP. · 3ddff947
  Damien Leroux authored Dec 22, 2016
  
  3ddff947
- Merge branch 'new_model_impl' of... · cd94702d
  damien authored Dec 21, 2016
```
Merge branch 'new_model_impl' of git+ssh://scm.mulcyber.toulouse.inra.fr//var/lib/gforge/chroot/scmrepos/git/spel/spel into new_model_impl
```
  cd94702d
20 Dec, 2016 1 commit
- Applied GPL to all current source code. · 02e225f6
  damien authored Dec 19, 2016
  
  02e225f6
12 Dec, 2016 2 commits
- Applied MIT license to the code. · 35f5bca3
  Damien Leroux authored Dec 12, 2016
  
  35f5bca3
- Removed expat as a dependency from spell-marker. · ce9eacf1
  Damien Leroux authored Dec 12, 2016
  
  ce9eacf1
22 Nov, 2016 3 commits
- Added some simulated data and a hidden output in spell-marker to double-check the results. · bbfbc4c1
  Damien Leroux authored Nov 22, 2016
  
  bbfbc4c1
- Replaced cumbersome XML marker obs spec implementation with a sexier... · 5303d460
  Damien Leroux authored Nov 22, 2016
```
Replaced cumbersome XML marker obs spec implementation with a sexier json-based one. More user-friendly too.
```
  5303d460
- Deleted unused code. · c6835611
  Damien Leroux authored Nov 22, 2016
  
  c6835611
18 Nov, 2016 4 commits
- Implemented min-cut to handle table products in huge joint domains. · 014604ce
  Damien Leroux authored Nov 18, 2016
  
  014604ce
- Merge branch 'new_model_impl' of... · fcc66c6b
  Damien Leroux authored Nov 18, 2016
```
Merge branch 'new_model_impl' of git+ssh://scm.mulcyber.toulouse.inra.fr//var/lib/gforge/chroot/scmrepos/git/spel/spel into new_model_impl
```
  fcc66c6b
- Pipeline works, but there is an issue with big products. · 04ad4293
  Damien Leroux authored Nov 18, 2016
  
  04ad4293
- Switching to CLion and CMake. · be61fe3b
  damien authored Nov 18, 2016
  
  be61fe3b
15 Nov, 2016 1 commit
- Need to re-implement the creation of the LV. · 4f0af463
  Damien Leroux authored Nov 15, 2016
```
Bayesian computation seems to work but we still need the output in the
form of locus vectors.
```
  4f0af463
09 Nov, 2016 3 commits
- Added final optimization to squeeze factors. · 8e784d99
  Damien Leroux authored Nov 09, 2016
  
  8e784d99
- Added factor computation to new implementation. · 099251aa
  Damien Leroux authored Nov 09, 2016
  
  099251aa
- New implementation of graph_type&co. · eae0fd1c
  Damien Leroux authored Nov 09, 2016
```
This one is good, the old code was so bad and ugly.
```
  eae0fd1c
03 Nov, 2016 1 commit
- Integration in progress. About to trim old code from graphnode. · 91141d66
  Damien Leroux authored Nov 03, 2016
  
  91141d66
18 Oct, 2016 1 commit
- Now computing domains (new implementation). · 10e3be25
  Damien Leroux authored Oct 18, 2016
  
  10e3be25
11 Oct, 2016 1 commit
- Creating clean graphs now. Or so it seems. · 5fc743f3
  Damien Leroux authored Oct 11, 2016
  
  5fc743f3