Commits · 19488f009679414ee8c8a9af2f38d98f6a1a97b6 · QTL / spell-qtl

02 May, 2018 1 commit
- WIP. · 19488f00
  Damien Leroux authored May 02, 2018
  
  19488f00
03 Apr, 2018 1 commit
- Late commit with fixes and updates. See the diff… · 60f0b923
  Damien Leroux authored Apr 03, 2018
  
  60f0b923
19 Mar, 2018 1 commit
- 1st version of SMT/R. Had to rename MESSAGE into SPELL_STRING because of conflict. · 4de88457
  Damien Leroux authored Mar 19, 2018
  
  4de88457
13 Feb, 2018 1 commit
- Working implementation of using joint meioses wherever applicable. · 82a8cd1e
  Damien Leroux authored Feb 13, 2018
  
  82a8cd1e
23 Dec, 2017 1 commit
- First implementation of spell-map. · 198b00c0
  damien authored Dec 23, 2017
  
  198b00c0
19 Dec, 2017 1 commit
- WIP. · b211f878
  Damien Leroux authored Dec 19, 2017
  
  b211f878
22 Nov, 2017 1 commit
- various small fixes · fcb85d47
  Damien Leroux authored Nov 21, 2017
  
  fcb85d47
15 Jun, 2017 1 commit
- Compiles with clang. executes 10% faster with clang. · f8749dd1
  Damien Leroux authored Jun 15, 2017
  
  f8749dd1
10 May, 2017 1 commit
- New implementation of taskpool supersedes the older 3rd-party threadpool. · 44494e56
  Damien Leroux authored May 10, 2017
  
  44494e56
03 Jan, 2017 1 commit
- Organized the output files and added a log file for spell-qtl. · 6d23722a
  damien authored Jan 02, 2017
  
  6d23722a
28 Dec, 2016 1 commit
- Added output options for spell-marker. Untested. · 4685f2c6
  damien authored Dec 28, 2016
  
  4685f2c6
20 Dec, 2016 1 commit
- Applied GPL to all current source code. · 02e225f6
  damien authored Dec 19, 2016
  
  02e225f6
22 Nov, 2016 2 commits
- Added some simulated data and a hidden output in spell-marker to double-check the results. · bbfbc4c1
  Damien Leroux authored Nov 22, 2016
  
  bbfbc4c1
- Replaced cumbersome XML marker obs spec implementation with a sexier... · 5303d460
  Damien Leroux authored Nov 22, 2016
```
Replaced cumbersome XML marker obs spec implementation with a sexier json-based one. More user-friendly too.
```
  5303d460
18 Nov, 2016 2 commits
- Implemented min-cut to handle table products in huge joint domains. · 014604ce
  Damien Leroux authored Nov 18, 2016
  
  014604ce
- Pipeline works, but there is an issue with big products. · 04ad4293
  Damien Leroux authored Nov 18, 2016
  
  04ad4293
15 Nov, 2016 1 commit
- Need to re-implement the creation of the LV. · 4f0af463
  Damien Leroux authored Nov 15, 2016
```
Bayesian computation seems to work but we still need the output in the
form of locus vectors.
```
  4f0af463
09 Nov, 2016 1 commit
- New implementation of graph_type&co. · eae0fd1c
  Damien Leroux authored Nov 09, 2016
```
This one is good, the old code was so bad and ugly.
```
  eae0fd1c
03 Nov, 2016 1 commit
- Integration in progress. About to trim old code from graphnode. · 91141d66
  Damien Leroux authored Nov 03, 2016
  
  91141d66
11 Oct, 2016 1 commit
- Creating clean graphs now. Or so it seems. · 5fc743f3
  Damien Leroux authored Oct 11, 2016
  
  5fc743f3
31 May, 2016 1 commit
- Working implementation of hierarchical factor graph generation. · e9e1af77
  Damien Leroux authored May 31, 2016
  
  e9e1af77
29 Apr, 2016 1 commit
- New implementation working fine. Factor graph properly built with joint... · ebaefeeb
  Damien Leroux authored Apr 29, 2016
```
New implementation working fine. Factor graph properly built with joint factors as appropriate and spanning tree computation.
```
  ebaefeeb
10 Feb, 2016 1 commit
- Multiple bugfixes. Now handling Euralis data properly. · a38284dc
  Damien Leroux authored Feb 10, 2016
  
  a38284dc
20 Jan, 2016 1 commit
- Implemented wrapper around [io]?fstream. · f8a58710
  Damien Leroux authored Jan 20, 2016
  
  f8a58710
04 Jan, 2016 1 commit
- Big commit pre-merge back into master. · e3ba1ed8
  Damien Leroux authored Jan 04, 2016
  
  e3ba1ed8
06 Nov, 2015 1 commit
- WIP. Computations look nice. · 2f3fbfde
  Damien Leroux authored Nov 06, 2015
  
  2f3fbfde
03 Nov, 2015 1 commit
- Spell-marker now produces output. On to spell-qtl. · bf3d08d3
  Damien Leroux authored Nov 03, 2015
  
  bf3d08d3
29 Oct, 2015 1 commit
- Integration in progress. Now computing LVs. · 15f72f0b
  Damien Leroux authored Oct 29, 2015
  
  15f72f0b
01 Dec, 2014 7 commits
- Minor tweaks. · 956b851c
  Damien Leroux authored Dec 01, 2014
  
  956b851c
- Done with the refactorings, ready for v0.1 NOW! · e565d8ed
  Damien Leroux authored Nov 12, 2014
  
  e565d8ed
- Spell-marker working. Integration with spell-qtl WIP. · 39463cf5
  Damien Leroux authored Nov 05, 2014
  
  39463cf5
- Now emitting pop_data_type in output file. · a0c76b0a
  Damien Leroux authored Nov 05, 2014
  
  a0c76b0a
- Renamed jobs.cc into dispatch.cc · cf1df0c4
  Damien Leroux authored Oct 30, 2014
  
  cf1df0c4
- No crash, no leak. · e501e21b
  Damien Leroux authored Oct 29, 2014
  
  e501e21b
- Job dispatch implemented. MT, SSH, SGE. · cb6fbccb
  Damien Leroux authored Oct 28, 2014
  
  cb6fbccb