Commit 8a86e99b authored by Damien Leroux's avatar Damien Leroux
Browse files

Added dependencies on spell-* binaries.

parent f1c81037
......@@ -48,16 +48,16 @@ input_files/example1_F2.phen: $(EXAMPLE_DIR)/example1_F2.phen
.inputs: input_files/example1.map input_files/example1_F2.phen input_files/example1_F2.gen input_files/example1.ped
touch $@
my_directory/my_name.cache/my_name.spell-pedigree.data: $(EXAMPLE_DIR)/example1.ped
my_directory/my_name.cache/my_name.spell-pedigree.data: $(EXAMPLE_DIR)/example1.ped $(BINDIR)/spell-pedigree
$(BINDIR)/spell-pedigree -wd my_directory -n my_name -p $<
my_directory/my_name.cache/my_name.spell-marker.data: my_directory/my_name.cache/my_name.spell-pedigree.data $(EXAMPLE_DIR)/example1_F2.gen $(EXAMPLE_DIR)/example1_F2C.gen
my_directory/my_name.cache/my_name.spell-marker.data: my_directory/my_name.cache/my_name.spell-pedigree.data $(EXAMPLE_DIR)/example1_F2.gen $(EXAMPLE_DIR)/example1_F2C.gen $(BINDIR)/spell-marker
$(BINDIR)/spell-marker -wd my_directory -n my_name -m F2:A/B $(EXAMPLE_DIR)/example1_F2.gen -m F2C:A/C $(EXAMPLE_DIR)/example1_F2C.gen -o F2,F2C -O1 -Op
my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv: my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map
my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv: my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map $(BINDIR)/spell-qtl
$(BINDIR)/spell-qtl -wd my_directory -n my_name -P auto -p F2 $(EXAMPLE_DIR)/example1_F2.phen -p F2C $(EXAMPLE_DIR)/example1_F2C.phen -gm $(EXAMPLE_DIR)/example1.map output-nppop
my_directory/my_name.report/t1/t1_report.txt: my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map
my_directory/my_name.report/t1/t1_report.txt: my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map $(BINDIR)/spell-qtl
$(BINDIR)/spell-qtl -wd my_directory -n my_name -P auto -p F2 $(EXAMPLE_DIR)/example1_F2.phen -p F2C $(EXAMPLE_DIR)/example1_F2C.phen -gm $(EXAMPLE_DIR)/example1.map QTL-detection CIM-
output_files/my_name.ch1.F2.0.csv: my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv
......
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