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Problème réseau au niveau INRAE entre 10h15 et 10h35 aujourd'hui
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QTL
spell-qtl
Commits
8a86e99b
Commit
8a86e99b
authored
Jun 12, 2017
by
Damien Leroux
Browse files
Added dependencies on spell-* binaries.
parent
f1c81037
Changes
1
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doc/user_manual/makefile
View file @
8a86e99b
...
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@@ -48,16 +48,16 @@ input_files/example1_F2.phen: $(EXAMPLE_DIR)/example1_F2.phen
.inputs
:
input_files/example1.map input_files/example1_F2.phen input_files/example1_F2.gen input_files/example1.ped
touch
$@
my_directory/my_name.cache/my_name.spell-pedigree.data
:
$(EXAMPLE_DIR)/example1.ped
my_directory/my_name.cache/my_name.spell-pedigree.data
:
$(EXAMPLE_DIR)/example1.ped
$(BINDIR)/spell-pedigree
$(BINDIR)
/spell-pedigree
-wd
my_directory
-n
my_name
-p
$<
my_directory/my_name.cache/my_name.spell-marker.data
:
my_directory/my_name.cache/my_name.spell-pedigree.data $(EXAMPLE_DIR)/example1_F2.gen $(EXAMPLE_DIR)/example1_F2C.gen
my_directory/my_name.cache/my_name.spell-marker.data
:
my_directory/my_name.cache/my_name.spell-pedigree.data $(EXAMPLE_DIR)/example1_F2.gen $(EXAMPLE_DIR)/example1_F2C.gen
$(BINDIR)/spell-marker
$(BINDIR)
/spell-marker
-wd
my_directory
-n
my_name
-m
F2:A/B
$(EXAMPLE_DIR)
/example1_F2.gen
-m
F2C:A/C
$(EXAMPLE_DIR)
/example1_F2C.gen
-o
F2,F2C
-O1
-Op
my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv
:
my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map
my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv
:
my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map
$(BINDIR)/spell-qtl
$(BINDIR)
/spell-qtl
-wd
my_directory
-n
my_name
-P
auto
-p
F2
$(EXAMPLE_DIR)
/example1_F2.phen
-p
F2C
$(EXAMPLE_DIR)
/example1_F2C.phen
-gm
$(EXAMPLE_DIR)
/example1.map output-nppop
my_directory/my_name.report/t1/t1_report.txt
:
my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map
my_directory/my_name.report/t1/t1_report.txt
:
my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map
$(BINDIR)/spell-qtl
$(BINDIR)
/spell-qtl
-wd
my_directory
-n
my_name
-P
auto
-p
F2
$(EXAMPLE_DIR)
/example1_F2.phen
-p
F2C
$(EXAMPLE_DIR)
/example1_F2C.phen
-gm
$(EXAMPLE_DIR)
/example1.map QTL-detection CIM-
output_files/my_name.ch1.F2.0.csv
:
my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv
...
...
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