main.cc 807 Bytes
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#include "pedigree.h"
#include "pedigree_settings.h"

void print_usage();


int main(int argc, const char** argv)
{
    msg_handler_t::debug_enabled() = false;
    ped_settings_t* settings = ped_settings_t::from_args(argc, argv);
    if (!settings) {
        prg_name(basename(argv[0]));
        print_usage();
    } else {
        pedigree_type ped = read_pedigree(settings->pedigree_filename, settings->csv_sep, settings->max_states);
        std::string ped_output;
        if (settings->work_directory != "") {
            ped_output = settings->work_directory + "/" + basename(settings->pedigree_filename.c_str()) + ".ped-data";
        } else {
            ped_output = settings->pedigree_filename + ".ped-data";
        }
        ped.save(ped_output);
        delete settings;
    }
    return 0;
}