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spell-pedigree -p 100.ped
spell-marker -p  100.ped.ped-data -mos format-ABHCD.xml -m F2:ABHCD 100_F2.gen -m F2C:ABHCD 100_F2C.gen -n 100 -mt 8
spell-qtl -P auto -n test-2pop -wd /media/RAM/test-2pop -gm 100.map -p 100.popdata F2 100_F2.phen -p 100.popdata F2C 100_F2C.phen QTL-detection iQTLm cofactor-detection none connected -na --clean max-order 2