Explore projects
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Caulifinder : a pipeline for automatic detection and annotation of caulimovirid endogenous viral elements in plant genomes
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MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
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Obsolete. This modular version was not easy to manage. See packages in orgemia.inra.fr/metexplore/cbm/met4j-flux
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The Orfeo ToolBox (OTB) extension for Deep Learning. Enable the use of TensorFlow models on Remote Sensing images. Provides OTB applications for patches sampling, model training, model inference, hybrid models, and so on.
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mechanistic-statistical environement
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MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.
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panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.
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GWT experiments: minimum and basic dependencies to run on Tomcat along with code quality checkers.
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Nextflow pipeline to extract syntenic blocks using the MCScanX program.
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Utilisation de SEASON pour le calcul des indicateurs d'AgroMetInfo.
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